coarse setting - PMC

Brooke E. Husic, Nicholas E. Charron, Dominik Lemm, Jiang Wang, Adrià Pérez, Maciej Majewski, Andreas Krämer, Yaoyi Chen, Simon Olsson, Gianni de Fabritiis, Frank Noé, Cecilia Clementi

J Chem Phys. 2020 Nov 21; 153(19): 194101. Published online 2020 Nov 16. doi: 10.1063/5.0026133

PMCID:: PMC7671749

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A coarse-graining account of individuality: how the emergence of individuals represents a summary of lower-level evolutionary processes

Pierrick Bourrat

Biol Philos. 2023; 38(4): 33. Published online 2023 Aug 14. doi: 10.1007/s10539-023-09917-x

PMCID:: PMC10425515

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From System Modeling to System Analysis: The Impact of Resolution Level and Resolution Distribution in the Computer-Aided Investigation of Biomolecules

Marco Giulini, Marta Rigoli, Giovanni Mattiotti, Roberto Menichetti, Thomas Tarenzi, Raffaele Fiorentini, Raffaello Potestio

Front Mol Biosci. 2021; 8: 676976. Published online 2021 Jun 7. doi: 10.3389/fmolb.2021.676976

PMCID:: PMC8215203

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Construction of Multiscale Dissipative Particle Dynamics (DPD) Models from Other Coarse-Grained Models

Yinhan Wang, Rigoberto Hernandez

ACS Omega. 2024 Apr 16; 9(15): 17667–17680. Published online 2024 Apr 2. doi: 10.1021/acsomega.4c01868

PMCID:: PMC11025104

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Predicting the Elastic Modulus of Recycled Concrete Considering Material Nonuniformity: Mesoscale Numerical Method

Jing Zhang, Xuejun Zhu, Mingyuan Zhou, Xianwen Huang

Materials (Basel) 2024 Jan; 17(2): 379. Published online 2024 Jan 12. doi: 10.3390/ma17020379

PMCID:: PMC10817317

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Effect study of heat treatment on tensile properties of coarse sandstone

Yushun Yang, Sijiang Wei, Jihua Zhang, Jingke Wu, Chunlei Zhang

Sci Rep. 2022; 12: 17525. Published online 2022 Oct 20. doi: 10.1038/s41598-022-21164-w

PMCID:: PMC9585033

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Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained Models

Hyuntae Na, Robert L. Jernigan, Guang Song

PLoS Comput Biol. 2015 Oct; 11(10): e1004542. Published online 2015 Oct 16. doi: 10.1371/journal.pcbi.1004542

PMCID:: PMC4608564

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Coarse-Grained Descriptions of Dynamics for Networks with Both Intrinsic and Structural Heterogeneities

Tom Bertalan, Yan Wu, Carlo Laing, C. William Gear, Ioannis G. Kevrekidis

Front Comput Neurosci. 2017; 11: 43. Published online 2017 Jun 12. doi: 10.3389/fncom.2017.00043

PMCID:: PMC5467358

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Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance

Giray Enkavi, Matti Javanainen, Waldemar Kulig, Tomasz Róg, Ilpo Vattulainen

Chem Rev. 2019 May 8; 119(9): 5607–5774. Published online 2019 Mar 12. doi: 10.1021/acs.chemrev.8b00538

PMCID:: PMC6727218

Article PDF–116M

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A Review of Multiscale Computational Methods in Polymeric Materials

Ali Gooneie, Stephan Schuschnigg, Clemens Holzer

Polymers (Basel) 2017 Jan; 9(1): 16. Published online 2017 Jan 9. doi: 10.3390/polym9010016

PMCID:: PMC6432151

Article PDF–7.6M

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Hybrid Atomistic and Coarse-Grained Model for Surfactants in Apolar Solvents

Sampsa Vierros, Maria Sammalkorpi

ACS Omega. 2019 Sep 24; 4(13): 15581–15592. Published online 2019 Sep 13. doi: 10.1021/acsomega.9b01959

PMCID:: PMC6761742

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Accurate Sequence-Dependent Coarse-Grained Model for Conformational and Elastic Properties of Double-Stranded DNA

Salvatore Assenza, Rubén Pérez

J Chem Theory Comput. 2022 May 10; 18(5): 3239–3256. Published online 2022 Apr 8. doi: 10.1021/acs.jctc.2c00138

PMCID:: PMC9097290

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A Panoramic Localizer Based on Coarse-to-Fine Descriptors for Navigation Assistance

Yicheng Fang, Kailun Yang, Ruiqi Cheng, Lei Sun, Kaiwei Wang

Sensors (Basel) 2020 Aug; 20(15): 4177. Published online 2020 Jul 27. doi: 10.3390/s20154177

PMCID:: PMC7435417

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Coarse-Graining ddCOSMO through an Interface between Tinker and the ddX Library

Michele Nottoli, Aleksandr Mikhalev, Benjamin Stamm, Filippo Lipparini

J Phys Chem B. 2022 Nov 3; 126(43): 8827–8837. Published online 2022 Oct 20. doi: 10.1021/acs.jpcb.2c04579

PMCID:: PMC9639080

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Improved Parameterization for the Size Distribution of Emitted Dust Aerosols Reduces Model Underestimation of Super Coarse Dust

Jun Meng, Yue Huang, Danny M. Leung, Longlei Li, Adeyemi A. Adebiyi, Claire L. Ryder, Natalie M. Mahowald, Jasper F. Kok

Geophys Res Lett. 2022 Apr 28; 49(8): e2021GL097287. Published online 2022 Apr 19. doi: 10.1029/2021GL097287

PMCID:: PMC9286626

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Development of Coarse-Grained Models for Polymers by Trajectory Matching

Kévin Kempfer, Julien Devémy, Alain Dequidt, Marc Couty, Patrice Malfreyt

ACS Omega. 2019 Mar 31; 4(3): 5955–5967. Published online 2019 Mar 28. doi: 10.1021/acsomega.9b00144

PMCID:: PMC6648800

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PMC Images search for coarse setting

Figure 5

Experimental cholangiocarcinoma with a coarse stroma in the setting of SO. Van Gieson's staining, light microscopy magnification 20x (1: tumour glandular complexes; 2: coarse stroma).

Dynamics of the O. felineus Infestation Intensity and Egg Production in Carcinogenesis and Partial Hepatectomy in the Setting of Superinvasive Opisthorchiasis

Anal Cell Pathol (Amst). 2019;2019:8079368.
Figure 1

Cholangiocellular tumour with a forming coarse stroma in the setting of superinvasive opisthorchiasis (SO) was visualized with haematoxylin and eosin (HE) staining, magnification 200x (1: tumour glandular complexes; 2: forming coarse stroma).

Dynamics of the O. felineus Infestation Intensity and Egg Production in Carcinogenesis and Partial Hepatectomy in the Setting of Superinvasive Opisthorchiasis

Anal Cell Pathol (Amst). 2019;2019:8079368.
Figure 1

Grain-size distribution of coarse and fine grains, cement, and quick setting agent. FC, QSA, FS, and CS denote fine cement, quick setting agent, fine sands, and coarse sands, respectively.

Evaluation of Compressive Strength and Stiffness of Grouted Soils by Using Elastic Waves

ScientificWorldJournal. 2014;2014:215804.
Figure 7

Experimental cholangiocarcinoma with a tender stroma in the setting of SO. HE staining, magnification 200x (1: adenocarcinoma; 2: coarse cholangiectasis wall; 3: opisthorchii in cholangiectasis).

Dynamics of the O. felineus Infestation Intensity and Egg Production in Carcinogenesis and Partial Hepatectomy in the Setting of Superinvasive Opisthorchiasis

Anal Cell Pathol (Amst). 2019;2019:8079368.